Code
library(knitr)
library(targets)
library(MiscMetabar)
here::i_am("analysis/01_bioinformatics.qmd")Summary of the bioinformatic pipeline
Code
d_pq <- clean_pq(tar_read("d_vs", store=here::here("_targets/")))Cleaning suppress 2 taxa and 1 samples.Code
summary_plot_pq(d_pq)Cleaning suppress 0 taxa and 0 samples.
Code
tar_glimpse(script=here::here("_targets.R"), targets_only = TRUE, callr_arguments = list(show = FALSE))Code
tar_meta(store=here::here("_targets/"), targets_only = TRUE) |>
dplyr::mutate(time = paste0(seconds %/% 3600,":",seconds %/% 60,":",floor(seconds %% 60)))|>
dplyr::select(name, seconds, bytes, format, time) |>
dplyr::mutate(Gb=round(bytes/10^9,2)) |>
dplyr::arrange(desc(seconds), desc(bytes)) |>
kable()| name | seconds | bytes | format | time | Gb |
|---|---|---|---|---|---|
| tax_tab | 2233.722 | 130811 | rds | 0:37:13 | 0.00 |
| ddR | 1506.865 | 170093780 | qs | 0:25:6 | 0.17 |
| ddF | 1191.481 | 159773594 | qs | 0:19:51 | 0.16 |
| quality_raw_seq | 844.965 | 21139 | rds | 0:14:4 | 0.00 |
| cutadapt | 752.728 | 69632 | file | 0:12:32 | 0.00 |
| quality_seq_wo_primers | 557.035 | 20867 | rds | 0:9:17 | 0.00 |
| filtered | 550.641 | 164 | rds | 0:9:10 | 0.00 |
| quality_seq_filtered_trimmed_FW | 307.363 | 13258 | rds | 0:5:7 | 0.00 |
| quality_seq_filtered_trimmed_REV | 307.321 | 13258 | rds | 0:5:7 | 0.00 |
| derep_rs | 201.935 | 1713022114 | qs | 0:3:21 | 1.71 |
| derep_fs | 180.589 | 1207693426 | qs | 0:3:0 | 1.21 |
| err_rs | 134.503 | 17212 | qs | 0:2:14 | 0.00 |
| merged_seq | 126.202 | 1376856 | qs | 0:2:6 | 0.00 |
| err_fs | 112.515 | 16268 | qs | 0:1:52 | 0.00 |
| track_by_samples | 97.301 | 10170 | rds | 0:1:37 | 0.00 |
| quality_seq_filtered_trimmed_REV_plot | 70.716 | 11369583 | rds | 0:1:10 | 0.01 |
| build_website | 70.214 | 44 | rds | 0:1:10 | 0.00 |
| quality_seq_filtered_trimmed_FW_plot | 70.160 | 11369583 | rds | 0:1:10 | 0.01 |
| bioinfo_report | 57.386 | 44 | rds | 0:0:57 | 0.00 |
| quality_seq_wo_primers_plot | 3.805 | 765212 | rds | 0:0:3 | 0.00 |
| seqtab_wo_chimera | 3.447 | 298108 | rds | 0:0:3 | 0.00 |
| quality_raw_seq_plot | 1.479 | 424231 | rds | 0:0:1 | 0.00 |
| d_vs | 0.898 | 409383 | rds | 0:0:0 | 0.00 |
| d_vs_mumu | 0.758 | 395883 | rds | 0:0:0 | 0.00 |
| seq_tab_Pairs | 0.352 | 362296 | rds | 0:0:0 | 0.00 |
| d_vs_mumu_rarefy | 0.235 | 362059 | rds | 0:0:0 | 0.00 |
| track_sequences_samples_clusters | 0.097 | 376 | rds | 0:0:0 | 0.00 |
| s_d | 0.075 | 131725 | rds | 0:0:0 | 0.00 |
| data_phyloseq | 0.073 | 496389 | rds | 0:0:0 | 0.00 |
| data_raw | 0.022 | 5255 | rds | 0:0:0 | 0.00 |
| asv_tab | 0.012 | 293416 | rds | 0:0:0 | 0.00 |
| seqtab | 0.005 | 295766 | rds | 0:0:0 | 0.00 |
| sam_tab | 0.004 | 121606 | rds | 0:0:0 | 0.00 |
| file_refseq_taxo | 0.000 | 1022856 | file | 0:0:0 | 0.00 |
| file_sam_data_csv | 0.000 | 470237 | file | 0:0:0 | 0.00 |
| fastq_files_folder | 0.000 | 65536 | file | 0:0:0 | 0.00 |
| data_fnfs | 0.000 | 2733 | rds | 0:0:0 | 0.00 |
| data_fnrs | 0.000 | 2731 | rds | 0:0:0 | 0.00 |
| samp_n_otu_table | 0.000 | 1129 | rds | 0:0:0 | 0.00 |
Load phyloseq object from targets store
Code
d_pq <- tar_read("d_vs", store=here::here("_targets/"))The {targets} package is at the core of this project. Please read the intro of the user manual if you don’t know {targets}.
The {targets} package store … targets in a folder and can load (tar_load()) and read (tar_read) object from this folder.
Sample data
Code
DT::datatable(d_pq@sam_data)Sequences, samples and clusters across the pipeline
Code
kable(tar_read(track_sequences_samples_clusters, store=here::here("_targets/")))| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| Paired sequences | 20790310 | 5610 | 452 |
| Paired sequences without chimera | 20503830 | 3746 | 452 |
| Paired sequences without chimera and longer than 200bp | 20495636 | 3708 | 452 |
| ASV denoising | 20168435 | 3708 | 444 |
| OTU after vsearch reclustering at 97% | 20168435 | 1147 | 444 |
| OTU vs after mumu cleaning algorithm | 20168435 | 868 | 443 |
| OTU vs + mumu + rarefaction by sequencing depth | 880000 | 712 | 440 |
Code
tab_samp <- tar_read(track_by_samples, store=here::here("_targets/"))
for (li in names(tab_samp)) {
print(knitr::kable(tab_samp[[li]], caption = li, format="html"))
cat('\n<!-- -->\n\n')
}| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33764 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 33764 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 33764 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34039 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 34039 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 34039 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37302 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 37302 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 37302 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28735 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 28735 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 28735 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19426 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 19426 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 19426 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28423 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 28423 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 28423 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12978 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 12978 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 12978 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45319 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 45319 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 45319 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27227 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 27227 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 27227 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30156 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 30156 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 30156 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22793 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 22793 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 22793 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26824 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 26824 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 26824 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26391 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 26391 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 26391 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24560 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 24560 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 24560 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23990 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 23990 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 23990 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18896 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 18896 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 18896 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28776 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 28776 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 28776 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34371 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 34371 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 34371 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31887 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 31887 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 31887 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32255 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 32255 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 32255 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38973 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 38973 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 38973 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9825 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 9825 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 9825 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27942 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 27942 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 27942 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35587 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 35587 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 35587 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32068 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 32068 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 32068 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23716 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 23716 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 23716 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37877 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 37877 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 37877 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26300 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 26300 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 26300 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21399 | 40 | 1 |
| OTU after vsearch reclustering at 97% | 21399 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 21399 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31608 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 31608 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 31608 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36920 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 36920 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 36920 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12545 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 12545 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 12545 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19258 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 19258 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 19258 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27579 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 27579 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 27579 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24203 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 24203 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 24203 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36296 | 95 | 1 |
| OTU after vsearch reclustering at 97% | 36296 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 36296 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1774 | 15 | 1 |
| OTU after vsearch reclustering at 97% | 1774 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 1774 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29106 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 29106 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 29106 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35694 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 35694 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 35694 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15787 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 15787 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 15787 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38746 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 38746 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 38746 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40696 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 40696 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 40696 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22905 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 22905 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 22905 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30630 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 30630 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 30630 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47188 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 47188 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 47188 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26758 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 26758 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 26758 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38493 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 38493 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 38493 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35943 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 35943 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 35943 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34763 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 34763 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 34763 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28020 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 28020 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 28020 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29370 | 77 | 1 |
| OTU after vsearch reclustering at 97% | 29370 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 29370 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28291 | 93 | 1 |
| OTU after vsearch reclustering at 97% | 28291 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 28291 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41879 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 41879 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 41879 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24276 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 24276 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 24276 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25621 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 25621 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 25621 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37401 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 37401 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 37401 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19878 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 19878 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 19878 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 6308 | 38 | 1 |
| OTU after vsearch reclustering at 97% | 6308 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 6308 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16370 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 16370 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 16370 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29317 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 29317 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 29317 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30216 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 30216 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 30216 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19676 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 19676 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 19676 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44855 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 44855 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 44855 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34191 | 92 | 1 |
| OTU after vsearch reclustering at 97% | 34191 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 34191 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40991 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 40991 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 40991 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31608 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 31608 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 31608 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43648 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 43648 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 43648 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26797 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 26797 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 26797 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28250 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 28250 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 28250 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28744 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 28744 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 28744 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42168 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 42168 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 42168 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36628 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 36628 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 36628 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29946 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 29946 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 29946 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43029 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 43029 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 43029 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48050 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 48050 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 48050 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40065 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 40065 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 40065 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25966 | 77 | 1 |
| OTU after vsearch reclustering at 97% | 25966 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 25966 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22412 | 54 | 1 |
| OTU after vsearch reclustering at 97% | 22412 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 22412 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48171 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 48171 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 48171 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38438 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 38438 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 38438 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38092 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 38092 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 38092 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16550 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 16550 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 16550 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15170 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 15170 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 15170 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17176 | 42 | 1 |
| OTU after vsearch reclustering at 97% | 17176 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 17176 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34120 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 34120 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 34120 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 3443 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 3443 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 3443 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44591 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 44591 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 44591 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42837 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 42837 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 42837 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51252 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 51252 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 51252 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33261 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 33261 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 33261 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47173 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 47173 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 47173 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55445 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 55445 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 55445 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29290 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 29290 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 29290 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63756 | 206 | 1 |
| OTU after vsearch reclustering at 97% | 63756 | 178 | 1 |
| OTU vs after mumu cleaning algorithm | 63756 | 163 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55404 | 198 | 1 |
| OTU after vsearch reclustering at 97% | 55404 | 156 | 1 |
| OTU vs after mumu cleaning algorithm | 55404 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53179 | 193 | 1 |
| OTU after vsearch reclustering at 97% | 53179 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 53179 | 147 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59673 | 210 | 1 |
| OTU after vsearch reclustering at 97% | 59673 | 173 | 1 |
| OTU vs after mumu cleaning algorithm | 59673 | 158 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42665 | 171 | 1 |
| OTU after vsearch reclustering at 97% | 42665 | 140 | 1 |
| OTU vs after mumu cleaning algorithm | 42665 | 132 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59150 | 211 | 1 |
| OTU after vsearch reclustering at 97% | 59150 | 170 | 1 |
| OTU vs after mumu cleaning algorithm | 59150 | 164 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 124 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52426 | 193 | 1 |
| OTU after vsearch reclustering at 97% | 52426 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 52426 | 142 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 108 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54820 | 204 | 1 |
| OTU after vsearch reclustering at 97% | 54820 | 168 | 1 |
| OTU vs after mumu cleaning algorithm | 54820 | 161 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44852 | 209 | 1 |
| OTU after vsearch reclustering at 97% | 44852 | 171 | 1 |
| OTU vs after mumu cleaning algorithm | 44852 | 157 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 133 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58499 | 209 | 1 |
| OTU after vsearch reclustering at 97% | 58499 | 157 | 1 |
| OTU vs after mumu cleaning algorithm | 58499 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44136 | 189 | 1 |
| OTU after vsearch reclustering at 97% | 44136 | 153 | 1 |
| OTU vs after mumu cleaning algorithm | 44136 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 126 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47518 | 183 | 1 |
| OTU after vsearch reclustering at 97% | 47518 | 145 | 1 |
| OTU vs after mumu cleaning algorithm | 47518 | 135 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44604 | 177 | 1 |
| OTU after vsearch reclustering at 97% | 44604 | 152 | 1 |
| OTU vs after mumu cleaning algorithm | 44604 | 143 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59232 | 212 | 1 |
| OTU after vsearch reclustering at 97% | 59232 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 59232 | 152 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59951 | 220 | 1 |
| OTU after vsearch reclustering at 97% | 59951 | 172 | 1 |
| OTU vs after mumu cleaning algorithm | 59951 | 167 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61091 | 221 | 1 |
| OTU after vsearch reclustering at 97% | 61091 | 176 | 1 |
| OTU vs after mumu cleaning algorithm | 61091 | 167 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 60517 | 222 | 1 |
| OTU after vsearch reclustering at 97% | 60517 | 170 | 1 |
| OTU vs after mumu cleaning algorithm | 60517 | 161 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 122 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 60528 | 193 | 1 |
| OTU after vsearch reclustering at 97% | 60528 | 150 | 1 |
| OTU vs after mumu cleaning algorithm | 60528 | 142 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61906 | 201 | 1 |
| OTU after vsearch reclustering at 97% | 61906 | 160 | 1 |
| OTU vs after mumu cleaning algorithm | 61906 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 108 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 65089 | 212 | 1 |
| OTU after vsearch reclustering at 97% | 65089 | 161 | 1 |
| OTU vs after mumu cleaning algorithm | 65089 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 67925 | 203 | 1 |
| OTU after vsearch reclustering at 97% | 67925 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 67925 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57529 | 203 | 1 |
| OTU after vsearch reclustering at 97% | 57529 | 162 | 1 |
| OTU vs after mumu cleaning algorithm | 57529 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 60061 | 187 | 1 |
| OTU after vsearch reclustering at 97% | 60061 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 60061 | 142 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50704 | 198 | 1 |
| OTU after vsearch reclustering at 97% | 50704 | 162 | 1 |
| OTU vs after mumu cleaning algorithm | 50704 | 149 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 74729 | 252 | 1 |
| OTU after vsearch reclustering at 97% | 74729 | 178 | 1 |
| OTU vs after mumu cleaning algorithm | 74729 | 166 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 136 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43249 | 131 | 1 |
| OTU after vsearch reclustering at 97% | 43249 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 43249 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63962 | 204 | 1 |
| OTU after vsearch reclustering at 97% | 63962 | 166 | 1 |
| OTU vs after mumu cleaning algorithm | 63962 | 160 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 126 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28337 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 28337 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 28337 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50082 | 211 | 1 |
| OTU after vsearch reclustering at 97% | 50082 | 175 | 1 |
| OTU vs after mumu cleaning algorithm | 50082 | 166 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55312 | 207 | 1 |
| OTU after vsearch reclustering at 97% | 55312 | 165 | 1 |
| OTU vs after mumu cleaning algorithm | 55312 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30389 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 30389 | 120 | 1 |
| OTU vs after mumu cleaning algorithm | 30389 | 118 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 105 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51340 | 190 | 1 |
| OTU after vsearch reclustering at 97% | 51340 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 51340 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53354 | 160 | 1 |
| OTU after vsearch reclustering at 97% | 53354 | 124 | 1 |
| OTU vs after mumu cleaning algorithm | 53354 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37218 | 184 | 1 |
| OTU after vsearch reclustering at 97% | 37218 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 37218 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41324 | 167 | 1 |
| OTU after vsearch reclustering at 97% | 41324 | 140 | 1 |
| OTU vs after mumu cleaning algorithm | 41324 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32428 | 156 | 1 |
| OTU after vsearch reclustering at 97% | 32428 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 32428 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35709 | 164 | 1 |
| OTU after vsearch reclustering at 97% | 35709 | 138 | 1 |
| OTU vs after mumu cleaning algorithm | 35709 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43864 | 189 | 1 |
| OTU after vsearch reclustering at 97% | 43864 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 43864 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37426 | 183 | 1 |
| OTU after vsearch reclustering at 97% | 37426 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 37426 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57235 | 195 | 1 |
| OTU after vsearch reclustering at 97% | 57235 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 57235 | 148 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29787 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 29787 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 29787 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40816 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 40816 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 40816 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45748 | 151 | 1 |
| OTU after vsearch reclustering at 97% | 45748 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 45748 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 106 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45109 | 191 | 1 |
| OTU after vsearch reclustering at 97% | 45109 | 153 | 1 |
| OTU vs after mumu cleaning algorithm | 45109 | 145 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 123 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52049 | 180 | 1 |
| OTU after vsearch reclustering at 97% | 52049 | 152 | 1 |
| OTU vs after mumu cleaning algorithm | 52049 | 143 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 107 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42689 | 186 | 1 |
| OTU after vsearch reclustering at 97% | 42689 | 149 | 1 |
| OTU vs after mumu cleaning algorithm | 42689 | 143 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48660 | 168 | 1 |
| OTU after vsearch reclustering at 97% | 48660 | 134 | 1 |
| OTU vs after mumu cleaning algorithm | 48660 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 106 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 69243 | 177 | 1 |
| OTU after vsearch reclustering at 97% | 69243 | 124 | 1 |
| OTU vs after mumu cleaning algorithm | 69243 | 117 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49689 | 181 | 1 |
| OTU after vsearch reclustering at 97% | 49689 | 137 | 1 |
| OTU vs after mumu cleaning algorithm | 49689 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63095 | 206 | 1 |
| OTU after vsearch reclustering at 97% | 63095 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 63095 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 123 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50305 | 170 | 1 |
| OTU after vsearch reclustering at 97% | 50305 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 50305 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 105 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54045 | 184 | 1 |
| OTU after vsearch reclustering at 97% | 54045 | 140 | 1 |
| OTU vs after mumu cleaning algorithm | 54045 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 62110 | 172 | 1 |
| OTU after vsearch reclustering at 97% | 62110 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 62110 | 126 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 104 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57810 | 208 | 1 |
| OTU after vsearch reclustering at 97% | 57810 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 57810 | 153 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54502 | 181 | 1 |
| OTU after vsearch reclustering at 97% | 54502 | 142 | 1 |
| OTU vs after mumu cleaning algorithm | 54502 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51271 | 166 | 1 |
| OTU after vsearch reclustering at 97% | 51271 | 135 | 1 |
| OTU vs after mumu cleaning algorithm | 51271 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51666 | 182 | 1 |
| OTU after vsearch reclustering at 97% | 51666 | 136 | 1 |
| OTU vs after mumu cleaning algorithm | 51666 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35536 | 147 | 1 |
| OTU after vsearch reclustering at 97% | 35536 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 35536 | 114 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48191 | 172 | 1 |
| OTU after vsearch reclustering at 97% | 48191 | 137 | 1 |
| OTU vs after mumu cleaning algorithm | 48191 | 129 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50109 | 172 | 1 |
| OTU after vsearch reclustering at 97% | 50109 | 143 | 1 |
| OTU vs after mumu cleaning algorithm | 50109 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35230 | 183 | 1 |
| OTU after vsearch reclustering at 97% | 35230 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 35230 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44584 | 161 | 1 |
| OTU after vsearch reclustering at 97% | 44584 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 44584 | 123 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39893 | 139 | 1 |
| OTU after vsearch reclustering at 97% | 39893 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 39893 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29401 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 29401 | 110 | 1 |
| OTU vs after mumu cleaning algorithm | 29401 | 107 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 96 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32187 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 32187 | 114 | 1 |
| OTU vs after mumu cleaning algorithm | 32187 | 111 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57820 | 173 | 1 |
| OTU after vsearch reclustering at 97% | 57820 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 57820 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37153 | 141 | 1 |
| OTU after vsearch reclustering at 97% | 37153 | 122 | 1 |
| OTU vs after mumu cleaning algorithm | 37153 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39517 | 166 | 1 |
| OTU after vsearch reclustering at 97% | 39517 | 137 | 1 |
| OTU vs after mumu cleaning algorithm | 39517 | 134 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53885 | 176 | 1 |
| OTU after vsearch reclustering at 97% | 53885 | 139 | 1 |
| OTU vs after mumu cleaning algorithm | 53885 | 132 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48304 | 166 | 1 |
| OTU after vsearch reclustering at 97% | 48304 | 141 | 1 |
| OTU vs after mumu cleaning algorithm | 48304 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32133 | 194 | 1 |
| OTU after vsearch reclustering at 97% | 32133 | 162 | 1 |
| OTU vs after mumu cleaning algorithm | 32133 | 155 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 130 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34319 | 188 | 1 |
| OTU after vsearch reclustering at 97% | 34319 | 151 | 1 |
| OTU vs after mumu cleaning algorithm | 34319 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25877 | 154 | 1 |
| OTU after vsearch reclustering at 97% | 25877 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 25877 | 126 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32906 | 189 | 1 |
| OTU after vsearch reclustering at 97% | 32906 | 162 | 1 |
| OTU vs after mumu cleaning algorithm | 32906 | 157 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35498 | 186 | 1 |
| OTU after vsearch reclustering at 97% | 35498 | 150 | 1 |
| OTU vs after mumu cleaning algorithm | 35498 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37600 | 187 | 1 |
| OTU after vsearch reclustering at 97% | 37600 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 37600 | 153 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 133 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35969 | 195 | 1 |
| OTU after vsearch reclustering at 97% | 35969 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 35969 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38581 | 217 | 1 |
| OTU after vsearch reclustering at 97% | 38581 | 171 | 1 |
| OTU vs after mumu cleaning algorithm | 38581 | 162 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 138 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41992 | 202 | 1 |
| OTU after vsearch reclustering at 97% | 41992 | 165 | 1 |
| OTU vs after mumu cleaning algorithm | 41992 | 160 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38645 | 209 | 1 |
| OTU after vsearch reclustering at 97% | 38645 | 173 | 1 |
| OTU vs after mumu cleaning algorithm | 38645 | 162 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36282 | 180 | 1 |
| OTU after vsearch reclustering at 97% | 36282 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 36282 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40651 | 196 | 1 |
| OTU after vsearch reclustering at 97% | 40651 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 40651 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 124 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40363 | 182 | 1 |
| OTU after vsearch reclustering at 97% | 40363 | 148 | 1 |
| OTU vs after mumu cleaning algorithm | 40363 | 140 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48114 | 199 | 1 |
| OTU after vsearch reclustering at 97% | 48114 | 160 | 1 |
| OTU vs after mumu cleaning algorithm | 48114 | 149 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36155 | 195 | 1 |
| OTU after vsearch reclustering at 97% | 36155 | 156 | 1 |
| OTU vs after mumu cleaning algorithm | 36155 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 131 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41041 | 195 | 1 |
| OTU after vsearch reclustering at 97% | 41041 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 41041 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31531 | 181 | 1 |
| OTU after vsearch reclustering at 97% | 31531 | 152 | 1 |
| OTU vs after mumu cleaning algorithm | 31531 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29282 | 173 | 1 |
| OTU after vsearch reclustering at 97% | 29282 | 137 | 1 |
| OTU vs after mumu cleaning algorithm | 29282 | 132 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29020 | 183 | 1 |
| OTU after vsearch reclustering at 97% | 29020 | 150 | 1 |
| OTU vs after mumu cleaning algorithm | 29020 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31511 | 181 | 1 |
| OTU after vsearch reclustering at 97% | 31511 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 31511 | 143 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 132 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21791 | 167 | 1 |
| OTU after vsearch reclustering at 97% | 21791 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 21791 | 140 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26530 | 160 | 1 |
| OTU after vsearch reclustering at 97% | 26530 | 138 | 1 |
| OTU vs after mumu cleaning algorithm | 26530 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25122 | 168 | 1 |
| OTU after vsearch reclustering at 97% | 25122 | 140 | 1 |
| OTU vs after mumu cleaning algorithm | 25122 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24693 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 24693 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 24693 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50142 | 195 | 1 |
| OTU after vsearch reclustering at 97% | 50142 | 157 | 1 |
| OTU vs after mumu cleaning algorithm | 50142 | 157 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47026 | 144 | 1 |
| OTU after vsearch reclustering at 97% | 47026 | 121 | 1 |
| OTU vs after mumu cleaning algorithm | 47026 | 119 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56987 | 177 | 1 |
| OTU after vsearch reclustering at 97% | 56987 | 143 | 1 |
| OTU vs after mumu cleaning algorithm | 56987 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44802 | 155 | 1 |
| OTU after vsearch reclustering at 97% | 44802 | 124 | 1 |
| OTU vs after mumu cleaning algorithm | 44802 | 120 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56374 | 193 | 1 |
| OTU after vsearch reclustering at 97% | 56374 | 157 | 1 |
| OTU vs after mumu cleaning algorithm | 56374 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55013 | 186 | 1 |
| OTU after vsearch reclustering at 97% | 55013 | 152 | 1 |
| OTU vs after mumu cleaning algorithm | 55013 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61883 | 195 | 1 |
| OTU after vsearch reclustering at 97% | 61883 | 165 | 1 |
| OTU vs after mumu cleaning algorithm | 61883 | 155 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 122 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51192 | 192 | 1 |
| OTU after vsearch reclustering at 97% | 51192 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 51192 | 153 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50056 | 155 | 1 |
| OTU after vsearch reclustering at 97% | 50056 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 50056 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 105 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42038 | 163 | 1 |
| OTU after vsearch reclustering at 97% | 42038 | 135 | 1 |
| OTU vs after mumu cleaning algorithm | 42038 | 131 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46684 | 159 | 1 |
| OTU after vsearch reclustering at 97% | 46684 | 126 | 1 |
| OTU vs after mumu cleaning algorithm | 46684 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40452 | 151 | 1 |
| OTU after vsearch reclustering at 97% | 40452 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 40452 | 127 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 109 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50079 | 187 | 1 |
| OTU after vsearch reclustering at 97% | 50079 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 50079 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53787 | 170 | 1 |
| OTU after vsearch reclustering at 97% | 53787 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 53787 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54954 | 208 | 1 |
| OTU after vsearch reclustering at 97% | 54954 | 167 | 1 |
| OTU vs after mumu cleaning algorithm | 54954 | 161 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 130 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 64393 | 247 | 1 |
| OTU after vsearch reclustering at 97% | 64393 | 195 | 1 |
| OTU vs after mumu cleaning algorithm | 64393 | 186 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 145 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54183 | 223 | 1 |
| OTU after vsearch reclustering at 97% | 54183 | 170 | 1 |
| OTU vs after mumu cleaning algorithm | 54183 | 163 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56650 | 211 | 1 |
| OTU after vsearch reclustering at 97% | 56650 | 166 | 1 |
| OTU vs after mumu cleaning algorithm | 56650 | 158 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 123 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45911 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 45911 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 45911 | 136 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41495 | 172 | 1 |
| OTU after vsearch reclustering at 97% | 41495 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 41495 | 139 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56695 | 196 | 1 |
| OTU after vsearch reclustering at 97% | 56695 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 56695 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44276 | 158 | 1 |
| OTU after vsearch reclustering at 97% | 44276 | 132 | 1 |
| OTU vs after mumu cleaning algorithm | 44276 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 60212 | 202 | 1 |
| OTU after vsearch reclustering at 97% | 60212 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 60212 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43481 | 181 | 1 |
| OTU after vsearch reclustering at 97% | 43481 | 141 | 1 |
| OTU vs after mumu cleaning algorithm | 43481 | 138 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53632 | 220 | 1 |
| OTU after vsearch reclustering at 97% | 53632 | 178 | 1 |
| OTU vs after mumu cleaning algorithm | 53632 | 172 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 135 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37902 | 163 | 1 |
| OTU after vsearch reclustering at 97% | 37902 | 136 | 1 |
| OTU vs after mumu cleaning algorithm | 37902 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55194 | 210 | 1 |
| OTU after vsearch reclustering at 97% | 55194 | 155 | 1 |
| OTU vs after mumu cleaning algorithm | 55194 | 145 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51297 | 174 | 1 |
| OTU after vsearch reclustering at 97% | 51297 | 140 | 1 |
| OTU vs after mumu cleaning algorithm | 51297 | 131 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54190 | 200 | 1 |
| OTU after vsearch reclustering at 97% | 54190 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 54190 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55981 | 196 | 1 |
| OTU after vsearch reclustering at 97% | 55981 | 145 | 1 |
| OTU vs after mumu cleaning algorithm | 55981 | 138 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 62454 | 182 | 1 |
| OTU after vsearch reclustering at 97% | 62454 | 150 | 1 |
| OTU vs after mumu cleaning algorithm | 62454 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34711 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 34711 | 87 | 1 |
| OTU vs after mumu cleaning algorithm | 34711 | 85 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54370 | 182 | 1 |
| OTU after vsearch reclustering at 97% | 54370 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 54370 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42269 | 176 | 1 |
| OTU after vsearch reclustering at 97% | 42269 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 42269 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63634 | 197 | 1 |
| OTU after vsearch reclustering at 97% | 63634 | 155 | 1 |
| OTU vs after mumu cleaning algorithm | 63634 | 147 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54722 | 152 | 1 |
| OTU after vsearch reclustering at 97% | 54722 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 54722 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 71524 | 215 | 1 |
| OTU after vsearch reclustering at 97% | 71524 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 71524 | 153 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 62001 | 176 | 1 |
| OTU after vsearch reclustering at 97% | 62001 | 142 | 1 |
| OTU vs after mumu cleaning algorithm | 62001 | 134 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59629 | 176 | 1 |
| OTU after vsearch reclustering at 97% | 59629 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 59629 | 137 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57598 | 211 | 1 |
| OTU after vsearch reclustering at 97% | 57598 | 162 | 1 |
| OTU vs after mumu cleaning algorithm | 57598 | 157 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 131 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 78082 | 169 | 1 |
| OTU after vsearch reclustering at 97% | 78082 | 127 | 1 |
| OTU vs after mumu cleaning algorithm | 78082 | 115 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 78620 | 222 | 1 |
| OTU after vsearch reclustering at 97% | 78620 | 167 | 1 |
| OTU vs after mumu cleaning algorithm | 78620 | 155 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 64332 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 64332 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 64332 | 123 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54464 | 158 | 1 |
| OTU after vsearch reclustering at 97% | 54464 | 123 | 1 |
| OTU vs after mumu cleaning algorithm | 54464 | 118 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 66651 | 154 | 1 |
| OTU after vsearch reclustering at 97% | 66651 | 126 | 1 |
| OTU vs after mumu cleaning algorithm | 66651 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 66294 | 178 | 1 |
| OTU after vsearch reclustering at 97% | 66294 | 145 | 1 |
| OTU vs after mumu cleaning algorithm | 66294 | 138 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50337 | 201 | 1 |
| OTU after vsearch reclustering at 97% | 50337 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 50337 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 130 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 89800 | 239 | 1 |
| OTU after vsearch reclustering at 97% | 89800 | 174 | 1 |
| OTU vs after mumu cleaning algorithm | 89800 | 165 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 69445 | 201 | 1 |
| OTU after vsearch reclustering at 97% | 69445 | 160 | 1 |
| OTU vs after mumu cleaning algorithm | 69445 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57004 | 179 | 1 |
| OTU after vsearch reclustering at 97% | 57004 | 140 | 1 |
| OTU vs after mumu cleaning algorithm | 57004 | 135 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 108 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 76481 | 231 | 1 |
| OTU after vsearch reclustering at 97% | 76481 | 171 | 1 |
| OTU vs after mumu cleaning algorithm | 76481 | 162 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 127 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 86828 | 285 | 1 |
| OTU after vsearch reclustering at 97% | 86828 | 195 | 1 |
| OTU vs after mumu cleaning algorithm | 86828 | 187 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 139 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 79832 | 222 | 1 |
| OTU after vsearch reclustering at 97% | 79832 | 168 | 1 |
| OTU vs after mumu cleaning algorithm | 79832 | 158 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 124 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48118 | 196 | 1 |
| OTU after vsearch reclustering at 97% | 48118 | 158 | 1 |
| OTU vs after mumu cleaning algorithm | 48118 | 152 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 134 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55911 | 192 | 1 |
| OTU after vsearch reclustering at 97% | 55911 | 156 | 1 |
| OTU vs after mumu cleaning algorithm | 55911 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 123 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52326 | 184 | 1 |
| OTU after vsearch reclustering at 97% | 52326 | 153 | 1 |
| OTU vs after mumu cleaning algorithm | 52326 | 147 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 74903 | 229 | 1 |
| OTU after vsearch reclustering at 97% | 74903 | 177 | 1 |
| OTU vs after mumu cleaning algorithm | 74903 | 170 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 131 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 82591 | 249 | 1 |
| OTU after vsearch reclustering at 97% | 82591 | 182 | 1 |
| OTU vs after mumu cleaning algorithm | 82591 | 171 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 122 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 67529 | 179 | 1 |
| OTU after vsearch reclustering at 97% | 67529 | 135 | 1 |
| OTU vs after mumu cleaning algorithm | 67529 | 127 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 66169 | 220 | 1 |
| OTU after vsearch reclustering at 97% | 66169 | 171 | 1 |
| OTU vs after mumu cleaning algorithm | 66169 | 166 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 134 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63298 | 200 | 1 |
| OTU after vsearch reclustering at 97% | 63298 | 156 | 1 |
| OTU vs after mumu cleaning algorithm | 63298 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57997 | 207 | 1 |
| OTU after vsearch reclustering at 97% | 57997 | 167 | 1 |
| OTU vs after mumu cleaning algorithm | 57997 | 157 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 124 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68012 | 214 | 1 |
| OTU after vsearch reclustering at 97% | 68012 | 169 | 1 |
| OTU vs after mumu cleaning algorithm | 68012 | 165 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 139 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 73013 | 227 | 1 |
| OTU after vsearch reclustering at 97% | 73013 | 181 | 1 |
| OTU vs after mumu cleaning algorithm | 73013 | 172 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 70954 | 197 | 1 |
| OTU after vsearch reclustering at 97% | 70954 | 155 | 1 |
| OTU vs after mumu cleaning algorithm | 70954 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 75082 | 196 | 1 |
| OTU after vsearch reclustering at 97% | 75082 | 153 | 1 |
| OTU vs after mumu cleaning algorithm | 75082 | 145 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 73669 | 186 | 1 |
| OTU after vsearch reclustering at 97% | 73669 | 139 | 1 |
| OTU vs after mumu cleaning algorithm | 73669 | 132 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 70912 | 219 | 1 |
| OTU after vsearch reclustering at 97% | 70912 | 164 | 1 |
| OTU vs after mumu cleaning algorithm | 70912 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46120 | 171 | 1 |
| OTU after vsearch reclustering at 97% | 46120 | 137 | 1 |
| OTU vs after mumu cleaning algorithm | 46120 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68285 | 223 | 1 |
| OTU after vsearch reclustering at 97% | 68285 | 170 | 1 |
| OTU vs after mumu cleaning algorithm | 68285 | 161 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 126 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44941 | 191 | 1 |
| OTU after vsearch reclustering at 97% | 44941 | 145 | 1 |
| OTU vs after mumu cleaning algorithm | 44941 | 140 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 77464 | 212 | 1 |
| OTU after vsearch reclustering at 97% | 77464 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 77464 | 151 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56098 | 163 | 1 |
| OTU after vsearch reclustering at 97% | 56098 | 132 | 1 |
| OTU vs after mumu cleaning algorithm | 56098 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 70814 | 199 | 1 |
| OTU after vsearch reclustering at 97% | 70814 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 70814 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 64611 | 193 | 1 |
| OTU after vsearch reclustering at 97% | 64611 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 64611 | 140 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 60079 | 205 | 1 |
| OTU after vsearch reclustering at 97% | 60079 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 60079 | 152 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 126 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 70420 | 213 | 1 |
| OTU after vsearch reclustering at 97% | 70420 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 70420 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 69246 | 223 | 1 |
| OTU after vsearch reclustering at 97% | 69246 | 166 | 1 |
| OTU vs after mumu cleaning algorithm | 69246 | 157 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68929 | 238 | 1 |
| OTU after vsearch reclustering at 97% | 68929 | 190 | 1 |
| OTU vs after mumu cleaning algorithm | 68929 | 181 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 138 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 74079 | 251 | 1 |
| OTU after vsearch reclustering at 97% | 74079 | 179 | 1 |
| OTU vs after mumu cleaning algorithm | 74079 | 171 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68448 | 208 | 1 |
| OTU after vsearch reclustering at 97% | 68448 | 167 | 1 |
| OTU vs after mumu cleaning algorithm | 68448 | 161 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 77140 | 232 | 1 |
| OTU after vsearch reclustering at 97% | 77140 | 172 | 1 |
| OTU vs after mumu cleaning algorithm | 77140 | 163 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 83248 | 234 | 1 |
| OTU after vsearch reclustering at 97% | 83248 | 171 | 1 |
| OTU vs after mumu cleaning algorithm | 83248 | 164 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 120 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 96867 | 237 | 1 |
| OTU after vsearch reclustering at 97% | 96867 | 174 | 1 |
| OTU vs after mumu cleaning algorithm | 96867 | 165 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 133 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 75339 | 179 | 1 |
| OTU after vsearch reclustering at 97% | 75339 | 133 | 1 |
| OTU vs after mumu cleaning algorithm | 75339 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44337 | 136 | 1 |
| OTU after vsearch reclustering at 97% | 44337 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 44337 | 114 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 86781 | 231 | 1 |
| OTU after vsearch reclustering at 97% | 86781 | 181 | 1 |
| OTU vs after mumu cleaning algorithm | 86781 | 178 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 140 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 94073 | 223 | 1 |
| OTU after vsearch reclustering at 97% | 94073 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 94073 | 155 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 106338 | 284 | 1 |
| OTU after vsearch reclustering at 97% | 106338 | 192 | 1 |
| OTU vs after mumu cleaning algorithm | 106338 | 177 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 97960 | 242 | 1 |
| OTU after vsearch reclustering at 97% | 97960 | 174 | 1 |
| OTU vs after mumu cleaning algorithm | 97960 | 162 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50596 | 175 | 1 |
| OTU after vsearch reclustering at 97% | 50596 | 136 | 1 |
| OTU vs after mumu cleaning algorithm | 50596 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54598 | 180 | 1 |
| OTU after vsearch reclustering at 97% | 54598 | 144 | 1 |
| OTU vs after mumu cleaning algorithm | 54598 | 139 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68082 | 208 | 1 |
| OTU after vsearch reclustering at 97% | 68082 | 159 | 1 |
| OTU vs after mumu cleaning algorithm | 68082 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 124 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44257 | 187 | 1 |
| OTU after vsearch reclustering at 97% | 44257 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 44257 | 140 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 120 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55728 | 185 | 1 |
| OTU after vsearch reclustering at 97% | 55728 | 151 | 1 |
| OTU vs after mumu cleaning algorithm | 55728 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58343 | 211 | 1 |
| OTU after vsearch reclustering at 97% | 58343 | 166 | 1 |
| OTU vs after mumu cleaning algorithm | 58343 | 159 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 131 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31162 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 31162 | 104 | 1 |
| OTU vs after mumu cleaning algorithm | 31162 | 102 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58022 | 187 | 1 |
| OTU after vsearch reclustering at 97% | 58022 | 148 | 1 |
| OTU vs after mumu cleaning algorithm | 58022 | 140 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59364 | 171 | 1 |
| OTU after vsearch reclustering at 97% | 59364 | 133 | 1 |
| OTU vs after mumu cleaning algorithm | 59364 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40032 | 187 | 1 |
| OTU after vsearch reclustering at 97% | 40032 | 152 | 1 |
| OTU vs after mumu cleaning algorithm | 40032 | 146 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61867 | 242 | 1 |
| OTU after vsearch reclustering at 97% | 61867 | 188 | 1 |
| OTU vs after mumu cleaning algorithm | 61867 | 175 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 137 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52434 | 182 | 1 |
| OTU after vsearch reclustering at 97% | 52434 | 146 | 1 |
| OTU vs after mumu cleaning algorithm | 52434 | 141 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44662 | 174 | 1 |
| OTU after vsearch reclustering at 97% | 44662 | 138 | 1 |
| OTU vs after mumu cleaning algorithm | 44662 | 135 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 122 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52490 | 166 | 1 |
| OTU after vsearch reclustering at 97% | 52490 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 52490 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50796 | 142 | 1 |
| OTU after vsearch reclustering at 97% | 50796 | 83 | 1 |
| OTU vs after mumu cleaning algorithm | 50796 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44958 | 129 | 1 |
| OTU after vsearch reclustering at 97% | 44958 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 44958 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50968 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 50968 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 50968 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50622 | 127 | 1 |
| OTU after vsearch reclustering at 97% | 50622 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 50622 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53125 | 140 | 1 |
| OTU after vsearch reclustering at 97% | 53125 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 53125 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50355 | 135 | 1 |
| OTU after vsearch reclustering at 97% | 50355 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 50355 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47079 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 47079 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 47079 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38388 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 38388 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 38388 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51939 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 51939 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 51939 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31409 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 31409 | 87 | 1 |
| OTU vs after mumu cleaning algorithm | 31409 | 82 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32107 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 32107 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 32107 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39866 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 39866 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 39866 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43374 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 43374 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 43374 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43561 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 43561 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 43561 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43380 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 43380 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 43380 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43769 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 43769 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 43769 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52275 | 131 | 1 |
| OTU after vsearch reclustering at 97% | 52275 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 52275 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51907 | 144 | 1 |
| OTU after vsearch reclustering at 97% | 51907 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 51907 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45387 | 126 | 1 |
| OTU after vsearch reclustering at 97% | 45387 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 45387 | 83 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 72 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56902 | 153 | 1 |
| OTU after vsearch reclustering at 97% | 56902 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 56902 | 93 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53249 | 141 | 1 |
| OTU after vsearch reclustering at 97% | 53249 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 53249 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45879 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 45879 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 45879 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41450 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 41450 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 41450 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34160 | 95 | 1 |
| OTU after vsearch reclustering at 97% | 34160 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 34160 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27821 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 27821 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 27821 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43875 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 43875 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 43875 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38981 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 38981 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 38981 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35046 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 35046 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 35046 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36587 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 36587 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 36587 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43983 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 43983 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 43983 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20189 | 48 | 1 |
| OTU after vsearch reclustering at 97% | 20189 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 20189 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51987 | 127 | 1 |
| OTU after vsearch reclustering at 97% | 51987 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 51987 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48924 | 145 | 1 |
| OTU after vsearch reclustering at 97% | 48924 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 48924 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49987 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 49987 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 49987 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51287 | 153 | 1 |
| OTU after vsearch reclustering at 97% | 51287 | 95 | 1 |
| OTU vs after mumu cleaning algorithm | 51287 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46634 | 110 | 1 |
| OTU after vsearch reclustering at 97% | 46634 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 46634 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43621 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 43621 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 43621 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37265 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 37265 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 37265 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30014 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 30014 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 30014 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44805 | 156 | 1 |
| OTU after vsearch reclustering at 97% | 44805 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 44805 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33916 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 33916 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 33916 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47073 | 127 | 1 |
| OTU after vsearch reclustering at 97% | 47073 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 47073 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31820 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 31820 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 31820 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55799 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 55799 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 55799 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39209 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 39209 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 39209 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44614 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 44614 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 44614 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34980 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 34980 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 34980 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45220 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 45220 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 45220 | 88 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39355 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 39355 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 39355 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40078 | 126 | 1 |
| OTU after vsearch reclustering at 97% | 40078 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 40078 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45356 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 45356 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 45356 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48742 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 48742 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 48742 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52619 | 135 | 1 |
| OTU after vsearch reclustering at 97% | 52619 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 52619 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41151 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 41151 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 41151 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32510 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 32510 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 32510 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36159 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 36159 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 36159 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43550 | 92 | 1 |
| OTU after vsearch reclustering at 97% | 43550 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 43550 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34872 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 34872 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 34872 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48214 | 119 | 1 |
| OTU after vsearch reclustering at 97% | 48214 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 48214 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48719 | 116 | 1 |
| OTU after vsearch reclustering at 97% | 48719 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 48719 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40149 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 40149 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 40149 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43833 | 116 | 1 |
| OTU after vsearch reclustering at 97% | 43833 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 43833 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47576 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 47576 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 47576 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42416 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 42416 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 42416 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48761 | 148 | 1 |
| OTU after vsearch reclustering at 97% | 48761 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 48761 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43021 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 43021 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 43021 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39726 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 39726 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 39726 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51265 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 51265 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 51265 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43527 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 43527 | 83 | 1 |
| OTU vs after mumu cleaning algorithm | 43527 | 78 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44462 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 44462 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 44462 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54785 | 141 | 1 |
| OTU after vsearch reclustering at 97% | 54785 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 54785 | 78 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49059 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 49059 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 49059 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52308 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 52308 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 52308 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50041 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 50041 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 50041 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40627 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 40627 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 40627 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36446 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 36446 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 36446 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40397 | 93 | 1 |
| OTU after vsearch reclustering at 97% | 40397 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 40397 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33437 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 33437 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 33437 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 69 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34338 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 34338 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 34338 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25236 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 25236 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 25236 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49021 | 136 | 1 |
| OTU after vsearch reclustering at 97% | 49021 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 49021 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38475 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 38475 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 38475 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43866 | 116 | 1 |
| OTU after vsearch reclustering at 97% | 43866 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 43866 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25087 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 25087 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 25087 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48463 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 48463 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 48463 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42352 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 42352 | 87 | 1 |
| OTU vs after mumu cleaning algorithm | 42352 | 82 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48128 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 48128 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 48128 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49011 | 127 | 1 |
| OTU after vsearch reclustering at 97% | 49011 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 49011 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40065 | 111 | 1 |
| OTU after vsearch reclustering at 97% | 40065 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 40065 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36761 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 36761 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 36761 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36544 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 36544 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 36544 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39159 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 39159 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 39159 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42428 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 42428 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 42428 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39294 | 126 | 1 |
| OTU after vsearch reclustering at 97% | 39294 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 39294 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58963 | 137 | 1 |
| OTU after vsearch reclustering at 97% | 58963 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 58963 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41324 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 41324 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 41324 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41003 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 41003 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 41003 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34355 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 34355 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 34355 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16819 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 16819 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 16819 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40094 | 93 | 1 |
| OTU after vsearch reclustering at 97% | 40094 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 40094 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20336 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 20336 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 20336 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20009 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 20009 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 20009 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37939 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 37939 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 37939 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29709 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 29709 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 29709 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49528 | 122 | 1 |
| OTU after vsearch reclustering at 97% | 49528 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 49528 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34460 | 31 | 1 |
| OTU after vsearch reclustering at 97% | 34460 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 34460 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 19 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49666 | 43 | 1 |
| OTU after vsearch reclustering at 97% | 49666 | 26 | 1 |
| OTU vs after mumu cleaning algorithm | 49666 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 23 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34267 | 42 | 1 |
| OTU after vsearch reclustering at 97% | 34267 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 34267 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26981 | 18 | 1 |
| OTU after vsearch reclustering at 97% | 26981 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 26981 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 13 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34515 | 20 | 1 |
| OTU after vsearch reclustering at 97% | 34515 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 34515 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 15 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16714 | 12 | 1 |
| OTU after vsearch reclustering at 97% | 16714 | 11 | 1 |
| OTU vs after mumu cleaning algorithm | 16714 | 11 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 11 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34733 | 27 | 1 |
| OTU after vsearch reclustering at 97% | 34733 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 34733 | 18 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 78346 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 78346 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 78346 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29496 | 30 | 1 |
| OTU after vsearch reclustering at 97% | 29496 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 29496 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68224 | 134 | 1 |
| OTU after vsearch reclustering at 97% | 68224 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 68224 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 88 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11782 | 18 | 1 |
| OTU after vsearch reclustering at 97% | 11782 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 11782 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 75758 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 75758 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 75758 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18884 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 18884 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 18884 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 81644 | 110 | 1 |
| OTU after vsearch reclustering at 97% | 81644 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 81644 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 91965 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 91965 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 91965 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51816 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 51816 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 51816 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61571 | 37 | 1 |
| OTU after vsearch reclustering at 97% | 61571 | 26 | 1 |
| OTU vs after mumu cleaning algorithm | 61571 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 65662 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 65662 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 65662 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45968 | 48 | 1 |
| OTU after vsearch reclustering at 97% | 45968 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 45968 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 88189 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 88189 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 88189 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38550 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 38550 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 38550 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49094 | 54 | 1 |
| OTU after vsearch reclustering at 97% | 49094 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 49094 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22189 | 30 | 1 |
| OTU after vsearch reclustering at 97% | 22189 | 25 | 1 |
| OTU vs after mumu cleaning algorithm | 22189 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20442 | 27 | 1 |
| OTU after vsearch reclustering at 97% | 20442 | 24 | 1 |
| OTU vs after mumu cleaning algorithm | 20442 | 24 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 23 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 64828 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 64828 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 64828 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 84988 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 84988 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 84988 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61863 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 61863 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 61863 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42769 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 42769 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 42769 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57123 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 57123 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 57123 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 117814 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 117814 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 117814 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 13825 | 17 | 1 |
| OTU after vsearch reclustering at 97% | 13825 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 13825 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 14 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63014 | 33 | 1 |
| OTU after vsearch reclustering at 97% | 63014 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 63014 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12602 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 12602 | 10 | 1 |
| OTU vs after mumu cleaning algorithm | 12602 | 10 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 10 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 5186 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 5186 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 5186 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 2 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 73495 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 73495 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 73495 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 79372 | 33 | 1 |
| OTU after vsearch reclustering at 97% | 79372 | 26 | 1 |
| OTU vs after mumu cleaning algorithm | 79372 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31932 | 21 | 1 |
| OTU after vsearch reclustering at 97% | 31932 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 31932 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 14 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 100780 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 100780 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 100780 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 70119 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 70119 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 70119 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 83248 | 23 | 1 |
| OTU after vsearch reclustering at 97% | 83248 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 83248 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 11 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32626 | 36 | 1 |
| OTU after vsearch reclustering at 97% | 32626 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 32626 | 32 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17194 | 37 | 1 |
| OTU after vsearch reclustering at 97% | 17194 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 17194 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 71570 | 26 | 1 |
| OTU after vsearch reclustering at 97% | 71570 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 71570 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 12 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29408 | 12 | 1 |
| OTU after vsearch reclustering at 97% | 29408 | 7 | 1 |
| OTU vs after mumu cleaning algorithm | 29408 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 5 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 10 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 10 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 10 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 165 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 165 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 165 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 4943 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 4943 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 4943 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 2 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 3708 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 1147 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
Session Information
Session information are detailed below. More information about the machine, the system, as well as python and R packages, are available in the file data_final/information_run.txt .
Code
sessionInfo()R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Debian GNU/Linux 12 (bookworm)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Paris
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] MiscMetabar_0.10.1 purrr_1.0.2 dplyr_1.1.4 dada2_1.32.0
[5] Rcpp_1.0.13 ggplot2_3.5.1 phyloseq_1.48.0 targets_1.8.0
[9] knitr_1.48
loaded via a namespace (and not attached):
[1] bitops_1.0-9 deldir_2.0-4
[3] permute_0.9-7 rlang_1.1.4
[5] magrittr_2.0.3 ade4_1.7-22
[7] matrixStats_1.4.1 compiler_4.4.1
[9] mgcv_1.9-1 png_0.1-8
[11] callr_3.7.6 vctrs_0.6.5
[13] reshape2_1.4.4 stringr_1.5.1
[15] pwalign_1.0.0 pkgconfig_2.0.3
[17] crayon_1.5.3 fastmap_1.2.0
[19] backports_1.5.0 XVector_0.44.0
[21] labeling_0.4.3 utf8_1.2.4
[23] Rsamtools_2.20.0 rmarkdown_2.28
[25] UCSC.utils_1.0.0 ps_1.8.0
[27] xfun_0.48 cachem_1.1.0
[29] zlibbioc_1.50.0 GenomeInfoDb_1.40.1
[31] jsonlite_1.8.9 biomformat_1.32.0
[33] highr_0.11 rhdf5filters_1.16.0
[35] DelayedArray_0.30.1 Rhdf5lib_1.26.0
[37] BiocParallel_1.38.0 jpeg_0.1-10
[39] parallel_4.4.1 cluster_2.1.6
[41] R6_2.5.1 bslib_0.8.0
[43] RColorBrewer_1.1-3 stringi_1.8.4
[45] jquerylib_0.1.4 GenomicRanges_1.56.2
[47] SummarizedExperiment_1.34.0 iterators_1.0.14
[49] IRanges_2.38.1 Matrix_1.7-0
[51] splines_4.4.1 igraph_2.1.1
[53] tidyselect_1.2.1 abind_1.4-8
[55] yaml_2.3.10 vegan_2.6-8
[57] codetools_0.2-20 hwriter_1.3.2.1
[59] processx_3.8.4 lattice_0.22-6
[61] tibble_3.2.1 plyr_1.8.9
[63] Biobase_2.64.0 withr_3.0.1
[65] ShortRead_1.62.0 evaluate_1.0.1
[67] survival_3.7-0 RcppParallel_5.1.9
[69] Biostrings_2.72.1 pillar_1.9.0
[71] BiocManager_1.30.25 MatrixGenerics_1.16.0
[73] DT_0.33 renv_1.0.11
[75] foreach_1.5.2 stats4_4.4.1
[77] generics_0.1.3 rprojroot_2.0.4
[79] S4Vectors_0.42.1 munsell_0.5.1
[81] scales_1.3.0 base64url_1.4
[83] glue_1.8.0 tools_4.4.1
[85] interp_1.1-6 data.table_1.16.2
[87] GenomicAlignments_1.40.0 visNetwork_2.1.2
[89] rhdf5_2.48.0 grid_4.4.1
[91] ape_5.8 crosstalk_1.2.1
[93] latticeExtra_0.6-30 colorspace_2.1-1
[95] nlme_3.1-165 GenomeInfoDbData_1.2.12
[97] cli_3.6.3 fansi_1.0.6
[99] S4Arrays_1.4.1 gtable_0.3.5
[101] sass_0.4.9 digest_0.6.37
[103] BiocGenerics_0.50.0 SparseArray_1.4.8
[105] farver_2.1.2 htmlwidgets_1.6.4
[107] htmltools_0.5.8.1 multtest_2.60.0
[109] lifecycle_1.0.4 here_1.0.1
[111] httr_1.4.7 secretbase_1.0.3
[113] MASS_7.3-61 Citation
BibTeX citation:
@online{taudière2024,
author = {Taudière, Adrien},
title = {Bioinformatics Pipeline Summary},
date = {2024-10-29},
langid = {en}
}
For attribution, please cite this work as:
Taudière, Adrien. 2024. “Bioinformatics Pipeline Summary.”
October 29, 2024.